PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 568aa    MW: 64549.9 Da    PI: 5.0843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12316359755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  XP_013629190.1 316 HAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 359
                     68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-1610148IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.30E-15308363No hitNo description
PROSITE profilePS5088816.247309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18311374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-16315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10316359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16317372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MESNMQNLLE KLRPLVGARA WDYCVLWSLN EDQRFVKWMG CCCGGTQLIE EAGTEEFSFG  60
GCRDVMFHHP RTKSCEFLAH LPSSISLDSG IYAETLLTNQ TGWLTESSGP GFMQETICTR  120
VLVPIPRGLV ELFAARHVAE DQNVVDFVMG HCNMLMDETV TINMMAGDKV ESKPYGMLLP  180
GDIHQKGSSK EEEMMNLPSP YDISADQIRL NFLPQMNDYE SQQHLKMKSD YDHHHQTLGY  240
DLPENGNNMN PFNAVAEEGM SVMGEASLLV NEQQVGNDKE MNENATGSDC SDQIDDEDDP  300
KRKKKTGKHT QAKNLHAERR RRKKLNDRLY ALRSLVPRIT KLDRASILGD AINYVKELQN  360
ELKELQDELE ENSETEDGSN RQQGGMSLNG TVLTGFHQGL SCNSNLPDMK QDVDLENCND  420
KGQEMEPQVD VAHLDGREFF VKVICEYKPG GFTRLMEALD SLGLEVTNAN TTRFLSLVSN  480
VFKVEKNDSE MVPAEHVRNS LLEITRNTSR GWHDDQMATG SMQNEKNEVD YQHYDDHHHH  540
GGHHQLHDHQ MNQSAHHHHQ HINHYQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302323KKKTGKHTQAKNLHAERRRRKK
2317324ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629191.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_013629190.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLA0A078DKQ80.0A0A078DKQ8_BRANA; BnaC03g46740D protein
STRINGBra013041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein